Download svap-1.0, svap-web.
SVAP contains three sub packages: preiso, est-tools and drawiso.
preiso reads GFF or ECS file as input and give assembled isoforms.
est-tools has some useful utilities to deal with EST sequences, such as convert FASTA file to ECS file, create exons and isoforms sequences from ALT file.

preiso

preiso reads ESTs as input and gives assembled isoforms. Preiso supports two input formats: GFF and ECS, and the output format of preiso is ALT.

est-tools

est-tools contains some EST utilities: *get_exon_seqs.pl
create exon sequences from ALT file
*psl_to_gff.pl
convert blat PSL file to GFF file
*split_fasta.pl
split big FASTA file into severl small ones
*ecs_to_gff.pl
convert ECS file to GFF file
*get_single_seqs.pl
create isoform sequences from ALT file
*remote_create_ecs.pl
convert FASTA file to ECS file

drawiso

drawiso reads an ALT file as input, and gives a html file set which shows the graphical view of isoforms. here is an output example of drawiso.

svap-web

svap-web is SVAP web server code package.

The svap package are published under GNU GENERAL PUBLIC LICENSE.
Please refer to our Installation Guide for how to install the package.